Actually the Avenger crew encounters the shuttle in the Andromeda galaxy in episode 3 of Star Trek: Avenger after they were sent there by accident. They got caught in a wormhole in the center of the galaxy after getting sent there through the Subspace Highway that sent the Challenger II there in 2040s and the Enterprise A in 2289. The Challenger II became a museum piece for the race of Machines which made the enormous ship for the Voyager VI (V'ger) probe.
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